Taxon Passports
Showing all 64 entries
| ID | Rank | Domain | Preferred name |
Evidence
Evidence grade
E3 = Strong human clinical evidence E2 = Moderate human evidence E1 = Limited / preliminary |
Pathobiont
Pathobiont status
YES = confirmed pathobiont CD = Context Dependent NO = not a pathobiont UK = Unknown |
Clinical roles |
|---|---|---|---|---|---|---|
| MCA-BAC-000001 | family | Bacteria | Enterobacteriaceae | E2 | Yes | opportunistic pathogen |
| MCA-BAC-000002 | family | Bacteria | Enterococcaceae | E2 | Yes | opportunistic pathogen |
| MCA-BAC-000003 | family | Bacteria | Ruminococcaceae | E2 | no | protective commensal |
| MCA-BAC-000004 | family | Bacteria | Lachnospiraceae | E2 | no | protective commensal |
| MCA-BAC-000005 | family | Bacteria | Bifidobacteriaceae | E2 | no | protective commensal |
| MCA-BAC-000006 | species | Bacteria | Clostridioides difficile | E3 | Yes | opportunistic pathogen; primary pathogen |
| MCA-BAC-000007 | species | Bacteria | Eggerthella lenta | E3 | UK | commensal |
| MCA-BAC-000008 | species | Bacteria | Flavonifractor plautii | E3 | UK | commensal |
| MCA-BAC-000009 | species | Bacteria | Mediterraneibacter gnavus | E3 | UK | commensal |
| MCA-BAC-000010 | species | Bacteria | Enterocloster bolteae | E3 | UK | commensal |
| MCA-BAC-000011 | species | Bacteria | Sellimonas intestinalis | E3 | UK | commensal |
| MCA-BAC-000012 | species | Bacteria | Alistipes communis | E3 | UK | commensal |
| MCA-BAC-000013 | species | Bacteria | Odoribacter splanchnicus | E3 | UK | commensal |
| MCA-BAC-000014 | species | Bacteria | Clostridium butyricum | no | protective commensal | |
| MCA-BAC-000015 | species | Bacteria | Akkermansia muciniphila | E3 | no | probiotic candidate; protective commensal |
| MCA-BAC-000016 | genus | Bacteria | Bifidobacterium | E1 | no | commensal; probiotic candidate |
| MCA-BAC-000017 | species | Bacteria | Clostridium scindens | no | protective commensal | |
| MCA-BAC-000018 | species | Bacteria | Enterococcus faecalis | E2 | CD | commensal; opportunistic pathogen |
| MCA-BAC-000019 | species | Bacteria | Fusobacterium nucleatum | CD | biofilm former; coloniser; commensal; primary pathogen | |
| MCA-BAC-000020 | species | Bacteria | Lacticaseibacillus rhamnosus | E1 | CD | commensal; opportunistic pathogen; probiotic candidate |
| MCA-BAC-000021 | species | Bacteria | Pediococcus acidilactici | E1 | UK | |
| MCA-BAC-000022 | species | Bacteria | Porphyromonas gingivalis | Yes | biofilm former; commensal; primary pathogen | |
| MCA-BAC-000023 | species | Bacteria | Staphylococcus epidermidis | E2 | CD | commensal; opportunistic pathogen |
| MCA-BAC-000024 | subspecies | Bacteria | Bifidobacterium animalis subsp. lactis | no | probiotic candidate | |
| MCA-BAC-000025 | species | Bacteria | Bifidobacterium longum | E2 | no | commensal; probiotic candidate |
| MCA-BAC-000026 | species | Bacteria | Enterococcus gallinarum | E2 | Yes | coloniser; opportunistic pathogen |
| MCA-BAC-000027 | species | Bacteria | Faecalibacterium prausnitzii | E2 | no | protective commensal |
| MCA-BAC-000028 | genus | Bacteria | Faecalibacterium | E2 | no | protective commensal |
| MCA-BAC-000029 | species | Bacteria | Lacticaseibacillus paracasei | no | probiotic candidate | |
| MCA-BAC-000030 | species | Bacteria | Lactiplantibacillus plantarum | no | probiotic candidate | |
| MCA-BAC-000031 | species | Bacteria | Lactobacillus acidophilus | no | probiotic candidate | |
| MCA-BAC-000032 | species | Bacteria | Limosilactobacillus reuteri | E1 | CD | commensal; opportunistic pathogen |
| MCA-BAC-000033 | species | Bacteria | Bacteroides fragilis | E1 | CD | commensal; opportunistic pathogen |
| MCA-BAC-000034 | genus | Bacteria | Alistipes | no | protective commensal | |
| MCA-BAC-000035 | species | Bacteria | Bacteroides nordii | E2 | UK | commensal |
| MCA-BAC-000036 | species | Bacteria | Bacteroides thetaiotaomicron | E2 | no | commensal |
| MCA-BAC-000037 | species | Bacteria | Bacteroides uniformis | E2 | UK | commensal |
| MCA-BAC-000038 | species | Bacteria | Bifidobacterium bifidum | E2 | no | biomarker organism; commensal; immunomodulator; probiotic organism |
| MCA-BAC-000039 | genus | Bacteria | Blautia | no | protective commensal | |
| MCA-BAC-000040 | species | Bacteria | Collinsella aerofaciens | E2 | UK | commensal |
| MCA-BAC-000041 | genus | Bacteria | Dorea | no | protective commensal | |
| MCA-BAC-000042 | species | Bacteria | Enterobacter cloacae | E1 | Yes | coloniser; opportunistic pathogen |
| MCA-BAC-000043 | species | Bacteria | Enterocloster clostridioformis | E2 | UK | commensal |
| MCA-BAC-000044 | species | Bacteria | Klebsiella aerogenes | E1 | Yes | coloniser; opportunistic pathogen |
| MCA-BAC-000045 | species | Bacteria | Phascolarctobacterium faecium | E2 | UK | commensal |
| MCA-BAC-000046 | species | Bacteria | Prevotella copri | E2 | Yes | biomarker organism; opportunistic pathogen |
| MCA-BAC-000047 | genus | Bacteria | Roseburia | no | protective commensal | |
| MCA-BAC-000048 | species | Bacteria | Ruminococcus flavefaciens | E2 | no | protective commensal |
| MCA-BAC-000049 | family | Bacteria | Veillonellaceae | E1 | no | protective commensal |
| MCA-BAC-000050 | species | Bacteria | Alistipes indistinctus | E2 | no | protective commensal |
| MCA-BAC-000051 | species | Bacteria | Staphylococcus aureus | E1 | Yes | primary pathogen |
| MCA-BAC-000052 | species | Bacteria | Enterococcus faecium | E2 | UK | commensal |
| MCA-BAC-000053 | species | Bacteria | Bifidobacterium adolescentis | E2 | UK | commensal |
| MCA-BAC-000054 | species | Bacteria | Klebsiella pneumoniae | E2 | UK | commensal |
| MCA-BAC-000055 | species | Bacteria | Parabacteroides merdae | E2 | UK | commensal |
| MCA-BAC-000056 | species | Bacteria | Blautia obeum | E2 | UK | commensal |
| MCA-BAC-000057 | species | Bacteria | Roseburia intestinalis | E2 | UK | commensal |
| MCA-BAC-000058 | species | Bacteria | Helicobacter hepaticus | E1 | Yes | opportunistic pathogen |
| MCA-BAC-000059 | species | Bacteria | Veillonella parvula | E2 | UK | commensal |
| MCA-BAC-000060 | species | Bacteria | Helicobacter pylori | Yes | primary pathogen | |
| MCA-BAC-000061 | species | Bacteria | Streptococcus gallolyticus | Yes | ||
| MCA-BAC-000062 | species | Bacteria | Mycobacterium bovis | CD | primary pathogen; probiotic candidate | |
| MCA-FUN-000001 | species | Fungi | Aspergillus terreus | E1 | CD | opportunistic pathogen |
| MCA-FUN-000002 | species | Fungi | Saccharomyces boulardii | no | probiotic candidate |
MCA-BAC-000001
Enterobacteriaceae
family
Bacteria
Yes
|
opportunistic pathogen
|
E2
MCA-BAC-000002
Enterococcaceae
family
Bacteria
Yes
|
opportunistic pathogen
|
E2
MCA-BAC-000003
Ruminococcaceae
family
Bacteria
no
|
protective commensal
|
E2
MCA-BAC-000004
Lachnospiraceae
family
Bacteria
no
|
protective commensal
|
E2
MCA-BAC-000005
Bifidobacteriaceae
family
Bacteria
no
|
protective commensal
|
E2
MCA-BAC-000006
Clostridioides difficile
species
Bacteria
Yes
|
opportunistic pathogen
primary pathogen
|
E3
MCA-BAC-000007
Eggerthella lenta
species
Bacteria
UK
|
commensal
|
E3
MCA-BAC-000008
Flavonifractor plautii
species
Bacteria
UK
|
commensal
|
E3
MCA-BAC-000009
Mediterraneibacter gnavus
species
Bacteria
UK
|
commensal
|
E3
MCA-BAC-000010
Enterocloster bolteae
species
Bacteria
UK
|
commensal
|
E3
MCA-BAC-000011
Sellimonas intestinalis
species
Bacteria
UK
|
commensal
|
E3
MCA-BAC-000012
Alistipes communis
species
Bacteria
UK
|
commensal
|
E3
MCA-BAC-000013
Odoribacter splanchnicus
species
Bacteria
UK
|
commensal
|
E3
MCA-BAC-000014
Clostridium butyricum
species
Bacteria
no
|
protective commensal
MCA-BAC-000015
Akkermansia muciniphila
species
Bacteria
no
|
probiotic candidate
protective commensal
|
E3
MCA-BAC-000016
Bifidobacterium
genus
Bacteria
no
|
commensal
probiotic candidate
|
E1
MCA-BAC-000017
Clostridium scindens
species
Bacteria
no
|
protective commensal
MCA-BAC-000018
Enterococcus faecalis
species
Bacteria
CD
|
commensal
opportunistic pathogen
|
E2
MCA-BAC-000019
Fusobacterium nucleatum
species
Bacteria
CD
|
biofilm former
coloniser
commensal
primary pathogen
MCA-BAC-000020
Lacticaseibacillus rhamnosus
species
Bacteria
CD
|
commensal
opportunistic pathogen
probiotic candidate
|
E1
MCA-BAC-000021
Pediococcus acidilactici
species
Bacteria
UK
|
E1
MCA-BAC-000022
Porphyromonas gingivalis
species
Bacteria
Yes
|
biofilm former
commensal
primary pathogen
MCA-BAC-000023
Staphylococcus epidermidis
species
Bacteria
CD
|
commensal
opportunistic pathogen
|
E2
MCA-BAC-000024
Bifidobacterium animalis subsp. lactis
subspecies
Bacteria
no
|
probiotic candidate
MCA-BAC-000025
Bifidobacterium longum
species
Bacteria
no
|
commensal
probiotic candidate
|
E2
MCA-BAC-000026
Enterococcus gallinarum
species
Bacteria
Yes
|
coloniser
opportunistic pathogen
|
E2
MCA-BAC-000027
Faecalibacterium prausnitzii
species
Bacteria
no
|
protective commensal
|
E2
MCA-BAC-000028
Faecalibacterium
genus
Bacteria
no
|
protective commensal
|
E2
MCA-BAC-000029
Lacticaseibacillus paracasei
species
Bacteria
no
|
probiotic candidate
MCA-BAC-000030
Lactiplantibacillus plantarum
species
Bacteria
no
|
probiotic candidate
MCA-BAC-000031
Lactobacillus acidophilus
species
Bacteria
no
|
probiotic candidate
MCA-BAC-000032
Limosilactobacillus reuteri
species
Bacteria
CD
|
commensal
opportunistic pathogen
|
E1
MCA-BAC-000033
Bacteroides fragilis
species
Bacteria
CD
|
commensal
opportunistic pathogen
|
E1
MCA-BAC-000034
Alistipes
genus
Bacteria
no
|
protective commensal
MCA-BAC-000035
Bacteroides nordii
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000036
Bacteroides thetaiotaomicron
species
Bacteria
no
|
commensal
|
E2
MCA-BAC-000037
Bacteroides uniformis
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000038
Bifidobacterium bifidum
species
Bacteria
no
|
biomarker organism
commensal
immunomodulator
probiotic organism
|
E2
MCA-BAC-000039
Blautia
genus
Bacteria
no
|
protective commensal
MCA-BAC-000040
Collinsella aerofaciens
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000041
Dorea
genus
Bacteria
no
|
protective commensal
MCA-BAC-000042
Enterobacter cloacae
species
Bacteria
Yes
|
coloniser
opportunistic pathogen
|
E1
MCA-BAC-000043
Enterocloster clostridioformis
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000044
Klebsiella aerogenes
species
Bacteria
Yes
|
coloniser
opportunistic pathogen
|
E1
MCA-BAC-000045
Phascolarctobacterium faecium
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000046
Prevotella copri
species
Bacteria
Yes
|
biomarker organism
opportunistic pathogen
|
E2
MCA-BAC-000047
Roseburia
genus
Bacteria
no
|
protective commensal
MCA-BAC-000048
Ruminococcus flavefaciens
species
Bacteria
no
|
protective commensal
|
E2
MCA-BAC-000049
Veillonellaceae
family
Bacteria
no
|
protective commensal
|
E1
MCA-BAC-000050
Alistipes indistinctus
species
Bacteria
no
|
protective commensal
|
E2
MCA-BAC-000051
Staphylococcus aureus
species
Bacteria
Yes
|
primary pathogen
|
E1
MCA-BAC-000052
Enterococcus faecium
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000053
Bifidobacterium adolescentis
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000054
Klebsiella pneumoniae
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000055
Parabacteroides merdae
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000056
Blautia obeum
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000057
Roseburia intestinalis
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000058
Helicobacter hepaticus
species
Bacteria
Yes
|
opportunistic pathogen
|
E1
MCA-BAC-000059
Veillonella parvula
species
Bacteria
UK
|
commensal
|
E2
MCA-BAC-000060
Helicobacter pylori
species
Bacteria
Yes
|
primary pathogen
MCA-BAC-000061
Streptococcus gallolyticus
species
Bacteria
Yes
MCA-BAC-000062
Mycobacterium bovis
species
Bacteria
CD
|
primary pathogen
probiotic candidate
MCA-FUN-000001
Aspergillus terreus
species
Fungi
CD
|
opportunistic pathogen
|
E1
MCA-FUN-000002
Saccharomyces boulardii
species
Fungi
no
|
probiotic candidate